vrijdag 19 juni 2020

Why you should choose the minimization strategy in case of SARS-COV-2

We will explain the reason why  minimizing the number of infected people is the preferable strategy. Additionally we show you the consequence of replacing social distancing by Track, Trace and Isolation (TTI) in case of the SARS-COV-2 virus.

As soon as you have decided not to choose for an uncontrolled outbreak of the virus or for a (maximum) controlled herd immunity built up under a certain maximum IC beds condition, then there remains only one other solution, which is a strategy with the lowest number of new infections. The reason is, that it does not make sense to have intermediate solutions, because you have to put in the same amount of effort to arrive at an effective reproduction number R, no matter the level of new infections. And because that is the case, you better chose the level as low as possible. Additionally, you minimize number of people with Covid-19, low IC beds use, no postponed regular healthcare and cheaper to execute TTI.

As long as we have no vaccine or medicine apart from social distancing (including mouth caps, airco filtration, handwashing,1.5 m distance, etc.), we have only one other method to lower the effective reproduction number R, which is TTI. We can say that social distancing has been proven to be an effective way of reducing new infections. It comes, however, with an extreme negative side effect for our social way we like to behave and for the economy. So, exchanging social distancing measures with negative side effects for more neutral measures is desirable. Here TTI comes into play.

There is, however, a principle difference in the mechanism between TTI and Social Distancing. The advantage of Social Distancing measures is that it lowers the speed of virus transmission and comes into effect immediately when you start the measure, although you will notice the effect later due to the incubation time. It will also work for a-symptomatic people. TTI on the other hand will remove infected out of the population of infected people. It will not work for a-symptomatic persons, simply because you are not aware of them and so cannot track down their contacts, although they might be one of the traced contacts.

 Suppose we limit ourselves to track down the secondary infected people. For that we need to know all the people who fall ill daily due to SARS-COV-2. Let f be the fraction symptomatic, let g be the fraction of people who are tested and q the fraction of found corona contacts that we can put in quarantine, then the product fgq is a measure for the effectiveness of the TTI method.The factor fgq=1 means that every possible infected secondary contact is traced and put into isolation.

We will do a simulation and suppose there is social distancing with 41 % transmission reduction of virus diffusion speed to arrive at an effective R of Rt=1 and fgq=0 and measures start to act after day 5, representing the first noticed case of illness. The incubation time is distributed normal with mean x=6 days and standard deviation sigma=2 days. Instead of random dispersion we start with an outbreak of 100 infected people to ease comparison. The result of the simulation is shown in fig. 1. 

fig. 1 Simulation of outbreak, 100 infected at day 2, Rt=1 after day 5. Transmission due to social distancing 0.59.


 Why do we have to lower Rt below 1. As long as the number of infected people is high you want to lower that number as quick as possible. The higher Rt the fastest the process in an exponential upward trend. The opposite is also true. The lower Rt the fastest the process in an exponential downward trend. Onces the numbers are low you can mitigate the measures, but still keeping Rt<1.


fig. 2 Simulation of outbreak, 100 infected at day 2, Rt=1 after day 5. Transmission due to social distancing 0.59 and in addition fgq=0.3 (which is the same as social distancing with transmission 0.59*0.7=0.413).


Continuing our example we add TTI as a mean to lower Rt to Rt~0.6. See fig. 2. Interesting point is that with Rt=.06, we can easlily handle an outbreak of 100 people each month, leaving it a few days unattended, with needed IC capacity under a few beds.

If the mean incubation time is 4 days then the effect is slightly different but still characteristic.

End conclusion: 

In case of an agressive virus like SARS-COV-2 with a too high claim on health resources and too long time to built up herd immunity, the only remaining strategy is minimizing the number of infected people as much as possible. It is the best strategy for the economy and public health.

Social distancing and TTI have essentially different working principles. Where social distancing is lowering the risk of getting contaminated, TTI comes into action after you have been contaminated and put your contacts in isolation.

It also motivates why we have to put a lot of effort in making TTI a success, in order to allow mitigating social distancing measures, that negatively affect the economy. 

Disclaimer: This article has not been reviewed.

donderdag 18 juni 2020

IC bedden en triage, een tweede ramp?

Gisteren vertelde Ernst Kuiper over het uitbreiden van de IC capaciteit in OP1 NPO1.Als we in totaal op 1250 mikken en voor de reguliere zorg 1050 bedden nodig hebben, dan hebben we er voor corona patiënten 200 over en nog wat in Duitsland als ze die niet zelf nodig hebben. Goed dat we de voorbereidingen treffen.

Misschien komen die cijfers nog wat anders te liggen, maar bottom line is wie gaat straks bepalen of en hoeveel er opgeschaald gaat worden en hoeveel er van de reguliere zorg mag worden afgeknabbeld, hoeveel er naar Duitsland kunnen, komt er een noodhospitaal en hoeveel er dus beschikbaar zijn voor corona patiënten.

Daarna wordt het gemakkelijk dan volg je gewoon het triage protocol waar Diederik Gommers zo blij van is. Perfect dat we erover nadenken.

Maar nu nogmaals mijn vraag: Wie bepaalt in een onverhoopt geval hoeveel IC bedden er beschikbaar zijn/komen.

Het Kabinet, de doktoren, u?...

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